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kptn kaptin (actin binding protein) [ Clupea harengus (Atlantic herring) ]

Gene ID: 105892445, updated on 18-Jun-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
See related
Ensembl:ENSCHAG00020021897
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 3 NC_045154.1 (19213440..19219710)

Chromosome 3 - NC_045154.1Genomic Context describing neighboring genes Neighboring gene H3 histone, family 3C Neighboring gene cone-rod homeobox Neighboring gene transmembrane serine protease 15 Neighboring gene uncharacterized LOC116220015 Neighboring gene RNA binding motif protein 11 Neighboring gene lipase, member Ia

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045154.1 Chromosome 3 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045154.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    19213440..19219710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031564857.1 → XP_031420717.1  KICSTOR complex protein kaptin

    UniProtKB/TrEMBL
    A0A6P8FBZ0
    Related
    ENSCHAP00020050255.1, ENSCHAT00020053742.1
Nucleotide Protein
Heading Accession and Version

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