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tlr18 toll-like receptor 18 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105891725, updated on 18-Jun-2024

Summary

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Gene symbol
tlr18
Gene description
toll-like receptor 18
See related
Ensembl:ENSCHAG00020012439
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
zebrafish all
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Genomic context

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See tlr18 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 11 NC_045162.1 (5720154..5733235)

Chromosome 11 - NC_045162.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 4b Neighboring gene uncharacterized LOC105891724 Neighboring gene S100 calcium binding protein A1 Neighboring gene methyltransferase like 25B Neighboring gene interferon stimulated exonuclease gene 20-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045162.1 Chromosome 11 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 18
Names
toll-like receptor 2 type-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045162.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    5720154..5733235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031575638.2 → XP_031431498.1  toll-like receptor 18 isoform X1

    UniProtKB/TrEMBL
    A0A6P8FU24
    Conserved Domains (6) summary
    smart00255
    Location:677 → 814
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:387 → 560
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:75 → 98
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:386 → 403
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:75 → 133
    LRR_8; Leucine rich repeat
    cl39015
    Location:74 → 211
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  2. XM_012817906.3 → XP_012673360.1  toll-like receptor 18 isoform X2

    UniProtKB/TrEMBL
    A0A6P3VJ82
    Related
    ENSCHAP00020026878.1, ENSCHAT00020029010.1
    Conserved Domains (6) summary
    smart00255
    Location:663 → 800
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:373 → 546
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:61 → 84
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:372 → 389
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:61 → 119
    LRR_8; Leucine rich repeat
    cl39015
    Location:60 → 197
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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