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LOC105890776 titin-cap (telethonin) [ Clupea harengus (Atlantic herring) ]

Gene ID: 105890776, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105890776
Gene description
titin-cap (telethonin)
See related
Ensembl:ENSCHAG00020023376
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
tcap
Orthologs
zebrafish all
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Genomic context

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See LOC105890776 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 1 NC_045152.1 (9725320..9727796)

Chromosome 1 - NC_045152.1Genomic Context describing neighboring genes Neighboring gene StAR related lipid transfer domain containing 3 Neighboring gene melanoregulin Neighboring gene proline-rich protein 29 Neighboring gene integrin beta 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045152.1 Chromosome 1 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin Z domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of muscle stretch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomerogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle myosin thick filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle thin filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telethonin
Names
titin-cap

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045152.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    9725320..9727796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012816852.3 → XP_012672306.1  telethonin

    See identical proteins and their annotated locations for XP_012672306.1

    UniProtKB/TrEMBL
    A0A6P3VIJ3
    Related
    ENSCHAP00020053601.1, ENSCHAT00020057483.1
    Conserved Domains (1) summary
    pfam09470
    Location:30 → 179
    Telethonin; Telethonin protein
Nucleotide Protein
Heading Accession and Version

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