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dpy19l3 dpy-19 like C-mannosyltransferase 3 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105889001, updated on 18-Jun-2024

Summary

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Gene symbol
dpy19l3
Gene description
dpy-19 like C-mannosyltransferase 3
See related
Ensembl:ENSCHAG00020008264
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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See dpy19l3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 6 NC_045157.1 (27686451..27717048)

Chromosome 6 - NC_045157.1Genomic Context describing neighboring genes Neighboring gene teashirt zinc finger homeobox 3b Neighboring gene protein AF-9-like Neighboring gene neural-cadherin Neighboring gene zinc finger protein 507 Neighboring gene MTSS I-BAR domain containing 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045157.1 Chromosome 6 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L3
Names
dpy-19 like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045157.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    27686451..27717048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031569624.2 → XP_031425484.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FQP8
    Related
    ENSCHAP00020017936.1, ENSCHAT00020019156.1
    Conserved Domains (1) summary
    pfam10034
    Location:56 → 714
    Dpy19; Q-cell neuroblast polarisation

  2. XM_031569627.1 → XP_031425487.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FQP8
    Conserved Domains (1) summary
    pfam10034
    Location:56 → 714
    Dpy19; Q-cell neuroblast polarisation

  3. XM_012814759.3 → XP_012670213.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FQP8
    Conserved Domains (1) summary
    pfam10034
    Location:56 → 714
    Dpy19; Q-cell neuroblast polarisation

  4. XM_031569625.2 → XP_031425485.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FQP8
    Conserved Domains (1) summary
    pfam10034
    Location:56 → 714
    Dpy19; Q-cell neuroblast polarisation

  5. XM_031569626.2 → XP_031425486.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FQP8
    Related
    ENSCHAP00020017933.1, ENSCHAT00020019153.1
    Conserved Domains (1) summary
    pfam10034
    Location:56 → 714
    Dpy19; Q-cell neuroblast polarisation

  6. XM_031569623.2 → XP_031425483.1  probable C-mannosyltransferase DPY19L3 isoform X1

    UniProtKB/TrEMBL
    A0A6P8FAC5
    Related
    ENSCHAP00020017886.1, ENSCHAT00020019106.1
    Conserved Domains (1) summary
    pfam10034
    Location:71 → 729
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
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