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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105880060, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC3
Gene description
serine palmitoyltransferase long chain base subunit 3
See related
Ensembl:ENSMICG00000002259
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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See SPTLC3 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 18 NC_033677.1 (31330739..31493332)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012197375.1 (3096195..3258838)

Chromosome 18 - NC_033677.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105880059 Neighboring gene feline leukemia virus subgroup C receptor-related protein 1 pseudogene Neighboring gene uncharacterized LOC105880063 Neighboring gene isthmin 1 Neighboring gene taspase 1 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033677.1 Reference Mmur_3.0 Primary Assembly

    Range
    31330739..31493332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012780830.2 → XP_012636284.1  serine palmitoyltransferase 3

    UniProtKB/TrEMBL
    A0A8C5UMA8
    Related
    ENSMICP00000002066.2, ENSMICT00000002258.3
    Conserved Domains (2) summary
    PLN02483
    Location:57 → 549
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:109 → 524
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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