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HCFC1 host cell factor C1 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105867313, updated on 13-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
See related
Ensembl:ENSMICG00000016286
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) X NC_033692.1 (74956780..74982499, complement)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012203908.1 (290411..316130)

Chromosome X - NC_033692.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene uncharacterized LOC105867317 Neighboring gene transmembrane protein 187 Neighboring gene torsin-1A-interacting protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033692.1 Reference Mmur_3.0 Primary Assembly

    Range
    74956780..74982499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012757219.2 → XP_012612673.1  host cell factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8B7FU17, A0A8C5VBJ5
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1847 → 1888
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  2. XM_012757218.2 → XP_012612672.1  host cell factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8B7FV14, A0A8C5VBJ5
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1848 → 1889
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  3. XM_012757217.2 → XP_012612671.1  host cell factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8B7FU60, A0A8C5VBJ5
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1891 → 1932
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif

  4. XM_012757216.2 → XP_012612670.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8B7FUU5, A0A8C5VBJ5
    Related
    ENSMICP00000024729.2, ENSMICT00000053397.2
    Conserved Domains (6) summary
    PLN02153
    Location:12 → 330
    PLN02153; epithiospecifier protein
    cd00063
    Location:1892 → 1933
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:32 → 69
    Kelch_1; Kelch motif
    pfam13415
    Location:215 → 263
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:134 → 179
    Kelch_5; Kelch motif
Nucleotide Protein
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