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CD1D CD1d molecule [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105862455, updated on 13-Mar-2024

Summary

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Gene symbol
CD1D
Gene description
CD1d molecule
See related
Ensembl:ENSMICG00000037665
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
Orthologs
human mouse all
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Genomic context

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See CD1D in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 2 NC_033661.1 (118407950..118412225, complement)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012201552.1 (672021..676305, complement)

Chromosome 2 - NC_033661.1Genomic Context describing neighboring genes Neighboring gene T-cell surface glycoprotein CD1b-like Neighboring gene T-cell surface glycoprotein CD1b-like Neighboring gene uncharacterized LOC105862440 Neighboring gene kirre like nephrin family adhesion molecule 1 Neighboring gene eukaryotic initiation factor 4A-II pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
antigen-presenting glycoprotein CD1d

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033661.1 Reference Mmur_3.0 Primary Assembly

    Range
    118407950..118412225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012748739.2 → XP_012604193.1  antigen-presenting glycoprotein CD1d

    UniProtKB/TrEMBL
    A0A8B7F8C7
    Related
    ENSMICP00000017151.1, ENSMICT00000042827.2
    Conserved Domains (3) summary
    cd07698
    Location:203 → 295
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam14110
    Location:291 → 336
    DUF4282; Domain of unknown function (DUF4282)
    pfam16497
    Location:19 → 198
    MHC_I_3; MHC-I family domain
Nucleotide Protein
Heading Accession and Version

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