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TRPC2 short transient receptor potential channel 2 [ Microcebus murinus (gray mouse lemur) ]

Gene ID: 105860332, updated on 9-Nov-2023

Summary

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Gene symbol
TRPC2
Gene description
short transient receptor potential channel 2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Microcebus murinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
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Genomic context

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See TRPC2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Mmur_3.0 (GCF_000165445.2) 5 NC_033664.1 (56897104..56937919, complement)
100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012200685.1 (5361447..5394797)

Chromosome 5 - NC_033664.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosyltransferase 1 Neighboring gene ADP-ribosyltransferase 5 Neighboring gene ring finger protein 121 Neighboring gene interleukin 18 binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in single strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: short transient receptor potential channel 2-like; short transient receptor potential channel 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374477.1 → NP_001361406.1  short transient receptor potential channel 2

    Status: VALIDATED

    Source sequence(s)
    ABDC03006481
    UniProtKB/TrEMBL
    A0A8C5VGD0, A0A8C5VU54
    Conserved Domains (2) summary
    TIGR00870
    Location:24 → 758
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:93 → 138
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmur_3.0 Primary Assembly

Genomic

  1. NC_033664.1 Reference Mmur_3.0 Primary Assembly

    Range
    56897104..56937919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020286595.1 → XP_020142184.1  LOW QUALITY PROTEIN: short transient receptor potential channel 2-like

    UniProtKB/TrEMBL
    A0A8B7X3S8
    Conserved Domains (3) summary
    sd00045
    Location:468 → 513
    ANK; ANK repeat [structural motif]
    pfam01834
    Location:1 → 149
    XRCC1_N; XRCC1 N terminal domain
    cl26777
    Location:399 → 1133
    TRP_2; Transient receptor ion channel II
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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