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sfl N-deacetylase and N-sulfotransferase sfl [ Monomorium pharaonis (pharaoh ant) ]

Gene ID: 105840233, updated on 10-Oct-2024

Summary

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Gene symbol
sfl
Gene description
N-deacetylase and N-sulfotransferase sfl
See related
EnsemblRapid:LOC105840233
Gene type
protein coding
RefSeq status
MODEL
Organism
Monomorium pharaonis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Monomorium
Orthologs
fruit fly honey bee all
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Genomic context

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See sfl in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
102 current ASM1337386v2 (GCF_013373865.1) 3 NC_050469.1 (28126734..28393333, complement)
101 previous assembly ASM326058v2 (GCF_003260585.2) Unplaced Scaffold NW_021020471.1 (7684..21504)

Chromosome 3 - NC_050469.1Genomic Context describing neighboring genes Neighboring gene mitochondrial calcium uniporter Neighboring gene javelin Neighboring gene signal sequence receptor beta Neighboring gene uncharacterized LOC105833411 Neighboring gene uncharacterized LOC118644680 Neighboring gene uncharacterized LOC105834861 Neighboring gene crooked

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns. Mikheyev AS, et al. Elife, 2015 Jan 26. PMID 25621766, Free PMC Article
  2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monomorium pharaonis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1337386v2

Genomic

  1. NC_050469.1 Reference ASM1337386v2

    Range
    28126734..28393333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036283750.1 → XP_036139643.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    Related
    XP_036139643.1, XM_036283750.1
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:38 → 520
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_036283751.1 → XP_036139644.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    Related
    XP_036139644.1, XM_036283751.1
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:38 → 520
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_036283752.1 → XP_036139645.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    Related
    XP_036139645.1, XM_036283752.1
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:38 → 520
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_036283749.1 → XP_036139642.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    Related
    XP_036139642.1, XM_036283749.1
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:38 → 520
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases