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Scgdelta sarcoglycan delta [ Monomorium pharaonis (pharaoh ant) ]

Gene ID: 105836314, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:LOC105836314
Gene type
protein coding
RefSeq status
MODEL
Organism
Monomorium pharaonis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Monomorium
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1337386v2 (GCF_013373865.1) 8 NC_050474.1 (21918598..22108487, complement)
101 previous assembly ASM326058v2 (GCF_003260585.2) Unplaced Scaffold NW_021018418.1 (1907649..2091693)

Chromosome 8 - NC_050474.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114254237 Neighboring gene uncharacterized LOC118646948 Neighboring gene protein Cep78 homolog Neighboring gene phosphodiesterase 8 Neighboring gene uncharacterized LOC114254239 Neighboring gene uncharacterized LOC118647118 Neighboring gene uncharacterized LOC105837384 Neighboring gene uncharacterized LOC105837385 Neighboring gene uncharacterized LOC118647117

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns. Mikheyev AS, et al. Elife, 2015 Jan 26. PMID 25621766, Free PMC Article
  2. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan
Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monomorium pharaonis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1337386v2

Genomic

  1. NC_050474.1 Reference ASM1337386v2

    Range
    21918598..22108487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028189993.2 → XP_028045794.2  zeta-sarcoglycan isoform X1

    Related
    XP_028045794.2, XM_028189993.2
    Conserved Domains (1) summary
    pfam04790
    Location:131 → 412
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_036291365.1 → XP_036147258.1  zeta-sarcoglycan isoform X2

    Related
    XP_036147258.1, XM_036291365.1
    Conserved Domains (1) summary
    pfam04790
    Location:52 → 333
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_036291364.1 → XP_036147257.1  zeta-sarcoglycan isoform X2

    Related
    XP_036147257.1, XM_036291364.1
    Conserved Domains (1) summary
    pfam04790
    Location:52 → 333
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases