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LOC105832251 cobalamin trafficking protein CblD [ Monomorium pharaonis (pharaoh ant) ]

Gene ID: 105832251, updated on 10-Oct-2024

Summary

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Gene symbol
LOC105832251
Gene description
cobalamin trafficking protein CblD
See related
EnsemblRapid:LOC105832251
Gene type
protein coding
RefSeq status
MODEL
Organism
Monomorium pharaonis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Monomorium
Orthologs
fruit fly honey bee all
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Genomic context

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See LOC105832251 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1337386v2 (GCF_013373865.1) 3 NC_050469.1 (10646675..10648928, complement)
101 previous assembly ASM326058v2 (GCF_003260585.2) Unplaced Scaffold NW_021015332.1 (19812110..19826285)

Chromosome 3 - NC_050469.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein cognate 4-like Neighboring gene rhophilin-2 Neighboring gene touch insensitive larva B Neighboring gene uncharacterized LOC105832243 Neighboring gene 5'-3' exonuclease PLD3 Neighboring gene uncharacterized LOC105832246

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cobalamin trafficking protein CblD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monomorium pharaonis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1337386v2

Genomic

  1. NC_050469.1 Reference ASM1337386v2

    Range
    10646675..10648928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012673040.3 → XP_012528494.1  cobalamin trafficking protein CblD

    See identical proteins and their annotated locations for XP_012528494.1

    Related
    XP_012528494.1, XM_012673040.3
    Conserved Domains (1) summary
    pfam10229
    Location:61 → 273
    DUF2246; Uncharacterized conserved protein (DUF2246)

  2. XM_012673039.3 → XP_012528493.1  cobalamin trafficking protein CblD

    See identical proteins and their annotated locations for XP_012528493.1

    Related
    XP_012528493.1, XM_012673039.3
    Conserved Domains (1) summary
    pfam10229
    Location:61 → 273
    DUF2246; Uncharacterized conserved protein (DUF2246)
Nucleotide Protein
Heading Accession and Version

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