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UXS1 UDP-glucuronate decarboxylase 1 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105826347, updated on 13-Mar-2024

Summary

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Gene symbol
UXS1
Gene description
UDP-glucuronate decarboxylase 1
See related
Ensembl:ENSPCOG00000007831
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See UXS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012155062.1 (7388110..7471967, complement)

NW_012155062.1Genomic Context describing neighboring genes Neighboring gene NCK adaptor protein 2 Neighboring gene ECRG4 augurin precursor Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 2 Neighboring gene solute carrier family 5 member 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012155062.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UDP-glucuronate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronic acid decarboxylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012155062.1 Reference Pcoq_1.0 Primary Assembly

    Range
    7388110..7471967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012664305.1 → XP_012519759.1  UDP-glucuronic acid decarboxylase 1 isoform X3

    See identical proteins and their annotated locations for XP_012519759.1

    Conserved Domains (1) summary
    cd05230
    Location:1 → 284
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  2. XM_012664304.1 → XP_012519758.1  UDP-glucuronic acid decarboxylase 1 isoform X2

    Conserved Domains (3) summary
    cd05230
    Location:89 → 392
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    COG0451
    Location:89 → 396
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
    pfam11803
    Location:4 → 78
    UXS1_N; UDP-glucuronate decarboxylase N-terminal

  3. XM_012664303.1 → XP_012519757.1  UDP-glucuronic acid decarboxylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6ELG7
    Related
    ENSPCOP00000002571.1, ENSPCOT00000008887.1
    Conserved Domains (3) summary
    cd05230
    Location:94 → 397
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
    COG0451
    Location:94 → 401
    WcaG; Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]
    pfam11803
    Location:4 → 83
    UXS1_N; UDP-glucuronate decarboxylase N-terminal
Nucleotide Protein
Heading Accession and Version

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