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LOC105825519 mannose-binding protein A-like [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105825519, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105825519
Gene description
mannose-binding protein A-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
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Genomic context

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See LOC105825519 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012154174.1 (2027660..2032849)

NW_012154174.1Genomic Context describing neighboring genes Neighboring gene methionine adenosyltransferase 1A Neighboring gene pulmonary surfactant-associated protein A Neighboring gene surfactant protein D Neighboring gene transmembrane protein 254

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012154174.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannose-binding protein A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012154174.1 Reference Pcoq_1.0 Primary Assembly

    Range
    2027660..2032849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012663353.1 → XP_012518807.1  mannose-binding protein A-like isoform X2

    See identical proteins and their annotated locations for XP_012518807.1

    Conserved Domains (2) summary
    cd03591
    Location:137 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:38 → 94
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_012663355.1 → XP_012518809.1  mannose-binding protein A-like isoform X2

    See identical proteins and their annotated locations for XP_012518809.1

    Conserved Domains (2) summary
    cd03591
    Location:137 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:38 → 94
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_012663357.1 → XP_012518811.1  mannose-binding protein A-like isoform X2

    See identical proteins and their annotated locations for XP_012518811.1

    Conserved Domains (2) summary
    cd03591
    Location:137 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:38 → 94
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_012663352.1 → XP_012518806.1  mannose-binding protein A-like isoform X1

    Conserved Domains (2) summary
    cd03591
    Location:189 → 300
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:96 → 151
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_012663356.1 → XP_012518810.1  mannose-binding protein A-like isoform X2

    See identical proteins and their annotated locations for XP_012518810.1

    Conserved Domains (2) summary
    cd03591
    Location:137 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:38 → 94
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_012663354.1 → XP_012518808.1  mannose-binding protein A-like isoform X3

    Conserved Domains (2) summary
    cd03591
    Location:149 → 260
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:50 → 106
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_012663358.1 → XP_012518812.1  mannose-binding protein A-like isoform X2

    See identical proteins and their annotated locations for XP_012518812.1

    Conserved Domains (2) summary
    cd03591
    Location:137 → 248
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:38 → 94
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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