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TNRC6C trinucleotide repeat containing adaptor 6C [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105824010, updated on 13-Mar-2024

Summary

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Gene symbol
TNRC6C
Gene description
trinucleotide repeat containing adaptor 6C
See related
Ensembl:ENSPCOG00000021451
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See TNRC6C in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012153130.1 (95793..169419)

NW_012153130.1Genomic Context describing neighboring genes Neighboring gene transmembrane channel like 6 Neighboring gene transmembrane channel like 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012153130.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6C protein
Names
trinucleotide repeat containing 6C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012153130.1 Reference Pcoq_1.0 Primary Assembly

    Range
    95793..169419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012661343.1 → XP_012516797.1  trinucleotide repeat-containing gene 6C protein isoform X4

    Conserved Domains (5) summary
    cd12713
    Location:1517 → 1599
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:937 → 974
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:818 → 934
    Ago_hook; Argonaute hook
    pfam12938
    Location:1025 → 1252
    M_domain; M domain of GW182
    pfam16608
    Location:1262 → 1516
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  2. XM_012661341.1 → XP_012516795.1  trinucleotide repeat-containing gene 6C protein isoform X2

    UniProtKB/TrEMBL
    A0A2K6FYH9
    Related
    ENSPCOP00000019039.1, ENSPCOT00000029686.1
    Conserved Domains (5) summary
    cd12713
    Location:1512 → 1594
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:940 → 977
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:821 → 937
    Ago_hook; Argonaute hook
    pfam12938
    Location:1019 → 1247
    M_domain; M domain of GW182
    pfam16608
    Location:1257 → 1511
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  3. XM_012661340.1 → XP_012516794.1  trinucleotide repeat-containing gene 6C protein isoform X1

    UniProtKB/TrEMBL
    A0A2K6FYH4
    Related
    ENSPCOP00000019038.1, ENSPCOT00000029685.1
    Conserved Domains (5) summary
    cd12713
    Location:1548 → 1630
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:937 → 974
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:818 → 934
    Ago_hook; Argonaute hook
    pfam12938
    Location:1016 → 1244
    M_domain; M domain of GW182
    pfam16608
    Location:1254 → 1547
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  4. XM_012661342.1 → XP_012516796.1  trinucleotide repeat-containing gene 6C protein isoform X3

    Conserved Domains (5) summary
    cd12713
    Location:1498 → 1580
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:937 → 974
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:818 → 934
    Ago_hook; Argonaute hook
    pfam12938
    Location:1020 → 1194
    M_domain; M domain of GW182
    pfam16608
    Location:1204 → 1497
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
Nucleotide Protein
Heading Accession and Version

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