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SDC4 syndecan 4 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105821267, updated on 13-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
Ensembl:ENSPCOG00000023225
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012151574.1 (515445..534112)

NW_012151574.1Genomic Context describing neighboring genes Neighboring gene TP53 target 5 Neighboring gene SYS1 golgi trafficking protein Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene matrilin 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012151574.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012151574.1 Reference Pcoq_1.0 Primary Assembly

    Range
    515445..534112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012657944.1 → XP_012513398.1  syndecan-4

    UniProtKB/TrEMBL
    A0A2K6G7R6
    Related
    ENSPCOP00000022277.1, ENSPCOT00000032949.1
    Conserved Domains (1) summary
    pfam01034
    Location:141 → 198
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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