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LOC105821217 inhibitor of nuclear factor kappa-B kinase subunit epsilon [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105821217, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105821217
Gene description
inhibitor of nuclear factor kappa-B kinase subunit epsilon
See related
Ensembl:ENSPCOG00000026486
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
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Genomic context

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See LOC105821217 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012151541.1 (13611..34289, complement)

NW_012151541.1Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase activating protein 2 Neighboring gene family with sequence similarity 72 member A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012151541.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inhibitor of nuclear factor kappa-B kinase subunit epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012151541.1 Reference Pcoq_1.0 Primary Assembly

    Range
    13611..34289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012657889.1 → XP_012513343.1  inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X2

    UniProtKB/TrEMBL
    A0A2K6GNN2
    Related
    ENSPCOP00000027851.1, ENSPCOT00000038706.1
    Conserved Domains (3) summary
    smart00220
    Location:9 → 243
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd12219
    Location:297 → 383
    UBL_TBK1_like; Ubiquitin-Like Domain Of Human Tbk1 and similar proteins
    cl21453
    Location:15 → 330
    PKc_like; Protein Kinases, catalytic domain

  2. XM_012657888.1 → XP_012513342.1  inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1

    UniProtKB/TrEMBL
    A0A2K6GNM8, A0A2K6GNN2
    Related
    ENSPCOP00000027850.1, ENSPCOT00000038705.1
    Conserved Domains (3) summary
    smart00220
    Location:9 → 243
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd12219
    Location:297 → 383
    UBL_TBK1_like; Ubiquitin-Like Domain Of Human Tbk1 and similar proteins
    cl21453
    Location:15 → 330
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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