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SDC1 syndecan 1 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105817414, updated on 13-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
See related
Ensembl:ENSPCOG00000024117
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012149841.1 (3240838..3263485)

NW_012149841.1Genomic Context describing neighboring genes Neighboring gene b(0,+)-type amino acid transporter 1-like Neighboring gene pumilio RNA binding family member 2 Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene matrilin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012149841.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012149841.1 Reference Pcoq_1.0 Primary Assembly

    Range
    3240838..3263485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012653100.1 → XP_012508554.1  syndecan-1

    UniProtKB/TrEMBL
    A0A2K6GCH6
    Related
    ENSPCOP00000023934.1, ENSPCOT00000034614.1
    Conserved Domains (1) summary
    pfam01034
    Location:245 → 308
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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