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ERI2 ERI1 exoribonuclease family member 2 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105810934, updated on 13-Mar-2024

Summary

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Gene symbol
ERI2
Gene description
ERI1 exoribonuclease family member 2
See related
Ensembl:ENSPCOG00000016395
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See ERI2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012147523.1 (5326534..5335137)

NW_012147523.1Genomic Context describing neighboring genes Neighboring gene LYR motif containing 1 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene RNA exonuclease 5 Neighboring gene acyl-CoA synthetase medium chain family member 3 Neighboring gene THUMP domain containing 1 Neighboring gene acyl-CoA synthetase medium chain family member 4 Neighboring gene acyl-CoA synthetase medium chain family member 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012147523.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ERI1 exoribonuclease 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012147523.1 Reference Pcoq_1.0 Primary Assembly

    Range
    5326534..5335137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012644994.1 → XP_012500448.1  ERI1 exoribonuclease 2 isoform X2

    Conserved Domains (1) summary
    cd06133
    Location:37 → 230
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  2. XM_012644993.1 → XP_012500447.1  ERI1 exoribonuclease 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K6F7J4
    Related
    ENSPCOP00000009972.1, ENSPCOT00000020546.1
    Conserved Domains (2) summary
    cd06133
    Location:37 → 230
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
    pfam06839
    Location:589 → 637
    zf-GRF; GRF zinc finger
Nucleotide Protein
Heading Accession and Version

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