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TLR6 toll like receptor 6 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105810492, updated on 13-Mar-2024

Summary

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Gene symbol
TLR6
Gene description
toll like receptor 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See TLR6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012146412.1 (1763449..1780755)

NW_012146412.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 156 Neighboring gene family with sequence similarity 114 member A1 Neighboring gene ATPase inhibitor, mitochondrial pseudogene Neighboring gene nuclease-sensitive element-binding protein 1 pseudogene Neighboring gene toll-like receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012146412.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Toll-like receptor 2 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to diacyl bacterial lipopeptide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Toll-like receptor 2-Toll-like receptor 6 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012146412.1 Reference Pcoq_1.0 Primary Assembly

    Range
    1763449..1780755
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012644476.1 → XP_012499930.1  toll-like receptor 6

    Conserved Domains (7) summary
    smart00082
    Location:529 → 582
    LRRCT; Leucine rich repeat C-terminal domain
    smart00255
    Location:641 → 780
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:33 → 140
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:54 → 77
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:379 → 404
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:76 → 116
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:76 → 133
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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