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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105807533, updated on 13-Mar-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
Ensembl:ENSPCOG00000023799
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012140524.1 (3390826..3671782)

NW_012140524.1Genomic Context describing neighboring genes Neighboring gene caprin family member 2 Neighboring gene importin 8 Neighboring gene H3 histone, family 3C Neighboring gene hydrolethalus syndrome protein 1-like Neighboring gene ovochymase 1 Neighboring gene ERGIC and golgi 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012140524.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012140524.1 Reference Pcoq_1.0 Primary Assembly

    Range
    3390826..3671782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012640954.1 → XP_012496408.1  transmembrane and TPR repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A2K6GAS4, A0A2K6GAT8
    Related
    ENSPCOP00000023339.1, ENSPCOT00000034017.1
    Conserved Domains (7) summary
    COG0457
    Location:531 → 813
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:582 → 610
    TPR; TPR repeat [structural motif]
    pfam07719
    Location:483 → 516
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:311 → 365
    DUF1736; Domain of unknown function (DUF1736)
    pfam13176
    Location:652 → 680
    TPR_7; Tetratricopeptide repeat
    pfam13414
    Location:482 → 545
    TPR_11; TPR repeat
    pfam13428
    Location:689 → 726
    TPR_14; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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