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CPSF3 cleavage and polyadenylation specific factor 3 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105806731, updated on 11-Apr-2024

Summary

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Gene symbol
CPSF3
Gene description
cleavage and polyadenylation specific factor 3
See related
Ensembl:ENSPCOG00000023016
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See CPSF3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012138858.1 (317900..382386, complement)

NW_012138858.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 17 Neighboring gene isoamyl acetate hydrolyzing esterase 1 (putative) Neighboring gene integrin subunit beta 1 binding protein 1 Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 Neighboring gene 26S proteasome non-ATPase regulatory subunit 7 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012138858.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012138858.1 Reference Pcoq_1.0 Primary Assembly

    Range
    317900..382386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012639942.1 → XP_012495396.1  cleavage and polyadenylation specificity factor subunit 3

    UniProtKB/TrEMBL
    A0A2K6G6S6
    Related
    ENSPCOP00000021916.1, ENSPCOT00000032586.1
    Conserved Domains (4) summary
    smart01098
    Location:371 → 532
    CPSF73-100_C; This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins
    COG1236
    Location:14 → 359
    YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
    pfam07521
    Location:285 → 325
    RMMBL; RNA-metabolizing metallo-beta-lactamase
    cd16292
    Location:12 → 205
    CPSF3-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 3 and related proteins; MBL-fold metallo-hydrolase domain
Nucleotide Protein
Heading Accession and Version

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