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GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105806173, updated on 13-Mar-2024

Summary

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Gene symbol
GPCPD1
Gene description
glycerophosphocholine phosphodiesterase 1
See related
Ensembl:ENSPCOG00000008878
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See GPCPD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012138191.1 (4050389..4118370)

NW_012138191.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C20orf196 homolog Neighboring gene non-histone chromosomal protein HMG-14 pseudogene Neighboring gene U6 snRNA-associated Sm-like protein LSm1 pseudogene Neighboring gene MAP/microtubule affinity-regulating kinase 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012138191.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphocholine phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphocholine phosphodiesterase GPCPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012138191.1 Reference Pcoq_1.0 Primary Assembly

    Range
    4050389..4118370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012639243.1 → XP_012494697.1  glycerophosphocholine phosphodiesterase GPCPD1

    UniProtKB/TrEMBL
    A0A2K6EMD8
    Related
    ENSPCOP00000002899.1, ENSPCOT00000010055.1
    Conserved Domains (3) summary
    cd05814
    Location:4 → 113
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:305 → 580
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:309 → 580
    GDPD; Glycerophosphoryl diester phosphodiesterase family
Nucleotide Protein
Heading Accession and Version

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