U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CNTN1 contactin 1 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105805508, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CNTN1
Gene description
contactin 1
See related
Ensembl:ENSPCOG00000019694
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CNTN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012137191.1 (7032157..7343917, complement)

NW_012137191.1Genomic Context describing neighboring genes Neighboring gene protein RCC2-like Neighboring gene PDZ domain containing ring finger 4 Neighboring gene methionine aminopeptidase 1-like Neighboring gene mucin 19, oligomeric

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_012137191.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012137191.1 Reference Pcoq_1.0 Primary Assembly

    Range
    7032157..7343917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012638402.1 → XP_012493856.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6FPL0
    Related
    ENSPCOP00000015893.1, ENSPCOT00000026512.1
    Conserved Domains (10) summary
    cd04970
    Location:520 → 601
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First Ig domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:422 → 501
    IG_like; Immunoglobulin like
    cd00063
    Location:610 → 701
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:331 → 408
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:811 → 893
    fn3; Fibronectin type III domain
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain

  2. XM_012638403.1 → XP_012493857.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2K6FPH1
    Related
    ENSPCOP00000015895.1, ENSPCOT00000026514.1
    Conserved Domains (10) summary
    cd04970
    Location:509 → 590
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:123 → 219
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:29 → 121
    Ig1_Contactin-1; First Ig domain of contactin-1
    cd05851
    Location:230 → 317
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:418 → 490
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:411 → 490
    IG_like; Immunoglobulin like
    cd00063
    Location:599 → 690
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:320 → 397
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:800 → 882
    fn3; Fibronectin type III domain
    cl11960
    Location:321 → 397
    Ig; Immunoglobulin domain

  3. XM_012638404.1 → XP_012493858.1  contactin-1 isoform X3

    UniProtKB/TrEMBL
    A0A2K6FPH7, A0A2K6FPK8
    Related
    ENSPCOP00000015899.1, ENSPCOT00000026518.1
    Conserved Domains (8) summary
    cd04970
    Location:520 → 602
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First Ig domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:422 → 501
    IG_like; Immunoglobulin like
    pfam07679
    Location:331 → 408
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.