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CNTN1 contactin 1 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105805508, updated on 13-Mar-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
Ensembl:ENSPCOG00000019694
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012137191.1 (7032157..7343917, complement)

NW_012137191.1Genomic Context describing neighboring genes Neighboring gene protein RCC2-like Neighboring gene PDZ domain containing ring finger 4 Neighboring gene methionine aminopeptidase 1-like Neighboring gene mucin 19, oligomeric

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012137191.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012137191.1 Reference Pcoq_1.0 Primary Assembly

    Range
    7032157..7343917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012638402.1 → XP_012493856.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6FPL0
    Related
    ENSPCOP00000015893.1, ENSPCOT00000026512.1
    Conserved Domains (10) summary
    cd04970
    Location:520 → 601
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First Ig domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:422 → 501
    IG_like; Immunoglobulin like
    cd00063
    Location:610 → 701
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:331 → 408
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:811 → 893
    fn3; Fibronectin type III domain
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain

  2. XM_012638403.1 → XP_012493857.1  contactin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2K6FPH1
    Related
    ENSPCOP00000015895.1, ENSPCOT00000026514.1
    Conserved Domains (10) summary
    cd04970
    Location:509 → 590
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:123 → 219
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:29 → 121
    Ig1_Contactin-1; First Ig domain of contactin-1
    cd05851
    Location:230 → 317
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:418 → 490
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:411 → 490
    IG_like; Immunoglobulin like
    cd00063
    Location:599 → 690
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:320 → 397
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:800 → 882
    fn3; Fibronectin type III domain
    cl11960
    Location:321 → 397
    Ig; Immunoglobulin domain

  3. XM_012638404.1 → XP_012493858.1  contactin-1 isoform X3

    UniProtKB/TrEMBL
    A0A2K6FPH7, A0A2K6FPK8
    Related
    ENSPCOP00000015899.1, ENSPCOT00000026518.1
    Conserved Domains (8) summary
    cd04970
    Location:520 → 602
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:134 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05849
    Location:40 → 132
    Ig1_Contactin-1; First Ig domain of contactin-1
    cd05851
    Location:241 → 328
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:429 → 501
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:422 → 501
    IG_like; Immunoglobulin like
    pfam07679
    Location:331 → 408
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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