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SDCBP2 syndecan binding protein 2 [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105804912, updated on 13-Mar-2024

Summary

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Gene symbol
SDCBP2
Gene description
syndecan binding protein 2
See related
Ensembl:ENSPCOG00000024260
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See SDCBP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012136303.1 (5722648..5739715, complement)

NW_012136303.1Genomic Context describing neighboring genes Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene syntaphilin Neighboring gene FKBP prolyl isomerase 1A Neighboring gene NSFL1 cofactor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012136303.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012136303.1 Reference Pcoq_1.0 Primary Assembly

    Range
    5722648..5739715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012637655.1 → XP_012493109.1  syntenin-2

    UniProtKB/TrEMBL
    A0A2K6GD60
    Related
    ENSPCOP00000024171.1, ENSPCOT00000034851.1
    Conserved Domains (1) summary
    cd00992
    Location:106 → 185
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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