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LOC105803529 UDP-arabinopyranose mutase 1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105803529, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105803529
Gene description
UDP-arabinopyranose mutase 1
Locus tag
B456_007G176700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105803529 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 11 NC_068575.1 (47173475..47175258, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 7 NC_026935.1 (16431032..16432652)

Chromosome 11 - NC_068575.1Genomic Context describing neighboring genes Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 Neighboring gene PI-PLC X domain-containing protein At5g67130 Neighboring gene COBRA-like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Paterson AH, et al. Nature, 2012 Dec 20. PMID 23257886
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068575.1 Reference ASM2569854v1 Primary Assembly

    Range
    47173475..47175258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012635761.2 → XP_012491215.1  UDP-arabinopyranose mutase 1

    See identical proteins and their annotated locations for XP_012491215.1

    UniProtKB/TrEMBL
    A0A0D2QUQ5, A0A7J8PLU7
    Conserved Domains (1) summary
    PLN03180
    Location:14 → 355
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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