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LOC105788174 probable trehalase [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105788174, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105788174
Gene description
probable trehalase
Locus tag
B456_003G075200
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105788174 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 2 NC_068566.1 (30190224..30193260, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 3 NC_026931.1 (18131071..18134139)

Chromosome 2 - NC_068566.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene small nucleolar RNA R71 Neighboring gene hypothetical protein Neighboring gene uncharacterized LOC105789564

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Paterson AH, et al. Nature, 2012 Dec 20. PMID 23257886

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable trehalase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068566.1 Reference ASM2569854v1 Primary Assembly

    Range
    30190224..30193260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052627025.1 → XP_052482985.1  probable trehalase isoform X2

  2. XM_012614935.2 → XP_012470389.1  probable trehalase isoform X1

    See identical proteins and their annotated locations for XP_012470389.1

    UniProtKB/TrEMBL
    A0A0D2QPS8
    Conserved Domains (1) summary
    PLN02567
    Location:49 → 599
    PLN02567; alpha,alpha-trehalase
Nucleotide Protein
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