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LOC105783565 alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105783565, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105783565
Gene description
alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic
Locus tag
B456_013G092200
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105783565 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 13 NC_068577.1 (14805084..14811594)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 13 NC_026941.1 (14807030..14813527)

Chromosome 13 - NC_068577.1Genomic Context describing neighboring genes Neighboring gene putative SNAP25 homologous protein SNAP30 Neighboring gene uncharacterized LOC128035964 Neighboring gene uncharacterized LOC128036138 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Paterson AH, et al. Nature, 2012 Dec 20. PMID 23257886

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068577.1 Reference ASM2569854v1 Primary Assembly

    Range
    14805084..14811594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012609105.2 → XP_012464559.1  alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic

    See identical proteins and their annotated locations for XP_012464559.1

    UniProtKB/TrEMBL
    A0A0D2SB21, A0A7J8QLK3
    Conserved Domains (2) summary
    cd04300
    Location:79 → 949
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
    TIGR02093
    Location:82 → 949
    P_ylase; glycogen/starch/alpha-glucan phosphorylases
Nucleotide Protein
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