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LOC105782751 probable xyloglucan endotransglucosylase/hydrolase protein 28 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105782751, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105782751
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 28
Locus tag
B456_013G032000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105782751 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 13 NC_068577.1 (2479774..2482227)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 13 NC_026941.1 (2433153..2435821)

Chromosome 13 - NC_068577.1Genomic Context describing neighboring genes Neighboring gene probable transmembrane ascorbate ferrireductase 3 Neighboring gene uncharacterized LOC105784323 Neighboring gene anthranilate synthase beta subunit 1, chloroplastic-like Neighboring gene small nucleolar RNA Z103 Neighboring gene zinc finger CCCH domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068577.1 Reference ASM2569854v1 Primary Assembly

    Range
    2479774..2482227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012607703.2 → XP_012463157.1  probable xyloglucan endotransglucosylase/hydrolase protein 28

    See identical proteins and their annotated locations for XP_012463157.1

    UniProtKB/TrEMBL
    A0A0D2V8L3
    Conserved Domains (1) summary
    cd02176
    Location:34 → 295
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases