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LOC105778347 laccase-11 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105778347, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105778347
Gene description
laccase-11
Locus tag
B456_011G101300
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105778347 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 10 NC_068574.1 (11298154..11300611, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 11 NC_026939.1 (11404332..11406813, complement)

Chromosome 10 - NC_068574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105777351 Neighboring gene uncharacterized LOC105778155 Neighboring gene tubby-like F-box protein 5 Neighboring gene U-box domain-containing protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068574.1 Reference ASM2569854v1 Primary Assembly

    Range
    11298154..11300611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012602035.2 → XP_012457489.1  laccase-11

    See identical proteins and their annotated locations for XP_012457489.1

    UniProtKB/TrEMBL
    A0A0D2UR14
    Conserved Domains (4) summary
    cd13849
    Location:33 → 149
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:166 → 310
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:407 → 545
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:28 → 562
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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