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LOC105773986 putative pectate lyase 2 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105773986, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105773986
Gene description
putative pectate lyase 2
Locus tag
B456_010G182700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105773986 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 6 NC_068570.1 (51567381..51569127, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 10 NC_026938.1 (53236013..53237806, complement)

Chromosome 6 - NC_068570.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase Neighboring gene probable WRKY transcription factor 31 Neighboring gene uncharacterized LOC105773987 Neighboring gene uncharacterized LOC105773988 Neighboring gene pentatricopeptide repeat-containing protein At4g04370 Neighboring gene glycosyltransferase BC10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pectate lyase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068570.1 Reference ASM2569854v1 Primary Assembly

    Range
    51567381..51569127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012596256.2 → XP_012451710.1  putative pectate lyase 2

    See identical proteins and their annotated locations for XP_012451710.1

    UniProtKB/TrEMBL
    A0A0D2UGT3
    Conserved Domains (1) summary
    smart00656
    Location:119 → 314
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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