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LOC105773761 probable polygalacturonase At1g80170 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105773761, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105773761
Gene description
probable polygalacturonase At1g80170
Locus tag
B456_010G226900
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105773761 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 6 NC_068570.1 (58315587..58319067, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 10 NC_026938.1 (59826976..59830213, complement)

Chromosome 6 - NC_068570.1Genomic Context describing neighboring genes Neighboring gene probable disease resistance protein At5g63020 Neighboring gene uncharacterized LOC105774125 Neighboring gene disease resistance protein RFL1-like Neighboring gene probable disease resistance protein At4g14610 Neighboring gene uncharacterized LOC105774678 Neighboring gene uncharacterized LOC105774598

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polygalacturonase At1g80170

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068570.1 Reference ASM2569854v1 Primary Assembly

    Range
    58315587..58319067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012595861.2 → XP_012451315.1  probable polygalacturonase At1g80170

    See identical proteins and their annotated locations for XP_012451315.1

    UniProtKB/TrEMBL
    A0A0D2VE19
    Conserved Domains (2) summary
    PLN02218
    Location:18 → 430
    PLN02218; polygalacturonase ADPG
    cl19188
    Location:22 → 454
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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