U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105768475 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105768475, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105768475
Gene description
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic
Locus tag
B456_009G441800
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105768475 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (55705126..55713793)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (69340939..69349645)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene cytochrome b561 and DOMON domain-containing protein At4g12980 Neighboring gene uncharacterized LOC105768476 Neighboring gene ribonuclease 3-like protein 2 Neighboring gene GDP-L-galactose phosphorylase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    55705126..55713793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012588405.2 → XP_012443859.1  1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic

    See identical proteins and their annotated locations for XP_012443859.1

    UniProtKB/TrEMBL
    A0A0D2U4I6, A0A0D2V1X0
    Conserved Domains (4) summary
    PLN03244
    Location:1 → 903
    PLN03244; alpha-amylase; Provisional
    pfam02806
    Location:803 → 898
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
    cl07893
    Location:384 → 784
    AmyAc_family; Alpha amylase catalytic domain family
    cl09101
    Location:333 → 380
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

RNA

  1. XR_008195849.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases