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LOC105766712 probable galacturonosyltransferase 6 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105766712, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105766712
Gene description
probable galacturonosyltransferase 6
Locus tag
B456_001G243400
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105766712 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 7 NC_068571.1 (3648342..3652881)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 1 NC_026929.1 (48406358..48410893, complement)

Chromosome 7 - NC_068571.1Genomic Context describing neighboring genes Neighboring gene PRA1 family protein E Neighboring gene E3 ubiquitin protein ligase DRIP2 Neighboring gene magnesium transporter MRS2-I Neighboring gene photosystem II reaction center W protein, chloroplastic Neighboring gene DNA-directed RNA polymerase III subunit RPC8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068571.1 Reference ASM2569854v1 Primary Assembly

    Range
    3648342..3652881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012586293.2 → XP_012441747.1  probable galacturonosyltransferase 6

    See identical proteins and their annotated locations for XP_012441747.1

    UniProtKB/TrEMBL
    A0A0D2NDP2
    Conserved Domains (2) summary
    cd06429
    Location:310 → 585
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02718
    Location:1 → 599
    PLN02718; Probable galacturonosyltransferase
Nucleotide Protein
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