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LOC105766307 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105766307, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105766307
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Locus tag
B456_009G362600
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105766307 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 5 NC_068569.1 (48173498..48182315, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 9 NC_026937.1 (47933081..47941833, complement)

Chromosome 5 - NC_068569.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105767119 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 Neighboring gene terpene synthase 10-like Neighboring gene 8-amino-7-oxononanoate synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068569.1 Reference ASM2569854v1 Primary Assembly

    Range
    48173498..48182315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012585715.2 → XP_012441169.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X2

    UniProtKB/TrEMBL
    A0A0D2UZ11
    Conserved Domains (3) summary
    cd03788
    Location:84 → 549
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN03064
    Location:1 → 917
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
    cl21460
    Location:584 → 795
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_012585712.2 → XP_012441166.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    See identical proteins and their annotated locations for XP_012441166.1

    UniProtKB/TrEMBL
    A0A0D2UZ11
    Conserved Domains (3) summary
    cd03788
    Location:84 → 549
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN03064
    Location:1 → 925
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
    pfam02358
    Location:584 → 803
    Trehalose_PPase; Trehalose-phosphatase

  3. XM_012585716.2 → XP_012441170.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X3

    See identical proteins and their annotated locations for XP_012441170.1

    UniProtKB/TrEMBL
    A0A0D2TXZ4, A0A0D2UZ11
    Conserved Domains (3) summary
    cd03788
    Location:54 → 519
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN03064
    Location:1 → 895
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
    pfam02358
    Location:554 → 773
    Trehalose_PPase; Trehalose-phosphatase

  4. XM_012585713.2 → XP_012441167.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    See identical proteins and their annotated locations for XP_012441167.1

    UniProtKB/TrEMBL
    A0A0D2UZ11
    Conserved Domains (3) summary
    cd03788
    Location:84 → 549
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN03064
    Location:1 → 925
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
    pfam02358
    Location:584 → 803
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
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