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LOC105765594 alpha-L-fucosidase 1 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105765594, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105765594
Gene description
alpha-L-fucosidase 1
Locus tag
B456_008G282700
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105765594 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (56519480..56522367)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (55897385..55900288)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene receptor-like serine/threonine-protein kinase At4g25390 Neighboring gene probable protein phosphatase 2C 75 Neighboring gene DEAD-box ATP-dependent RNA helicase 7 Neighboring gene embryo-specific protein ATS3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-fucosidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    56519480..56522367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012584785.2 → XP_012440239.1  alpha-L-fucosidase 1

    See identical proteins and their annotated locations for XP_012440239.1

    UniProtKB/TrEMBL
    A0A0D2Q3E5
    Conserved Domains (3) summary
    COG3669
    Location:42 → 478
    AfuC; Alpha-L-fucosidase [Carbohydrate transport and metabolism]
    cl07893
    Location:76 → 339
    AmyAc_family; Alpha amylase catalytic domain family
    cl23730
    Location:373 → 475
    F5_F8_type_C; F5/8 type C domain
Nucleotide Protein
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