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LOC105764231 probable beta-1,4-xylosyltransferase IRX10 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105764231, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105764231
Gene description
probable beta-1,4-xylosyltransferase IRX10
Locus tag
B456_008G156000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105764231 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (42172254..42175052, complement)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (41658248..41661492, complement)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 13, mitochondrial Neighboring gene sterol 14-demethylase Neighboring gene uncharacterized LOC105764235 Neighboring gene uncharacterized LOC105764234 Neighboring gene protein LAX PANICLE 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    42172254..42175052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012582752.2 → XP_012438206.1  probable beta-1,4-xylosyltransferase IRX10

    See identical proteins and their annotated locations for XP_012438206.1

    UniProtKB/TrEMBL
    A0A0D2U3U6, A0A7J8PUD5
    Conserved Domains (1) summary
    pfam03016
    Location:47 → 342
    Exostosin; Exostosin family
Nucleotide Protein
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