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LOC105763239 probable pectinesterase 53 [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105763239, updated on 6-Jun-2024

Summary

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Gene symbol
LOC105763239
Gene description
probable pectinesterase 53
Locus tag
B456_008G064400
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC105763239 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (10426680..10429569)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (10311726..10313838)

Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene protein FMP32, mitochondrial Neighboring gene glycine-rich cell wall structural protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase 53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

    Range
    10426680..10429569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052625158.1 → XP_052481118.1  probable pectinesterase 53

    UniProtKB/TrEMBL
    A0A0D2PPW7, A0A7J8PSE8

  2. XM_052625157.1 → XP_052481117.1  probable pectinesterase 53

    UniProtKB/TrEMBL
    A0A0D2PPW7, A0A7J8PSE8

  3. XM_012581380.2 → XP_012436834.1  probable pectinesterase 53

    See identical proteins and their annotated locations for XP_012436834.1

    UniProtKB/TrEMBL
    A0A0D2PPW7, A0A7J8PSE8
    Conserved Domains (2) summary
    PLN02432
    Location:56 → 358
    PLN02432; putative pectinesterase
    PLN02682
    Location:5 → 358
    PLN02682; pectinesterase family protein
Nucleotide Protein
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