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LOC105759899 aspartyl/asparaginyl beta-hydroxylase [ Taeniopygia guttata (zebra finch) ]

Gene ID: 105759899, updated on 13-Aug-2024

Summary

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Gene symbol
LOC105759899
Gene description
aspartyl/asparaginyl beta-hydroxylase
See related
Ensembl:ENSTGUG00000011226
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Also known as
ASPH
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Genomic context

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See LOC105759899 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 2 NC_044213.2 (114876121..114948386, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 2 NC_045000.1 (116565179..116677326, complement)

Chromosome 2 - NC_044213.2Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene clavesin 1 Neighboring gene aspartyl/asparaginyl beta-hydroxylase-like Neighboring gene basic proline-rich protein-like Neighboring gene sodium/potassium transporting ATPase interacting 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
aspartate beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044213.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    114876121..114948386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041713915.1 → XP_041569849.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A0A674GZQ5
    Conserved Domains (5) summary
    TIGR02521
    Location:279 → 384
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:187 → 300
    tol_pal_ybgF; tol-pal system protein YbgF
    COG1729
    Location:52 → 296
    YbgF; Periplasmic TolA-binding protein (function unknown) [General function prediction only]
    sd00006
    Location:268 → 293
    TPR; TPR repeat [structural motif]
    cl40423
    Location:433 → 590
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_041713914.1 → XP_041569848.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A674GTV9
    Conserved Domains (5) summary
    TIGR02521
    Location:333 → 438
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:241 → 354
    tol_pal_ybgF; tol-pal system protein YbgF
    COG1729
    Location:106 → 350
    YbgF; Periplasmic TolA-binding protein (function unknown) [General function prediction only]
    sd00006
    Location:322 → 347
    TPR; TPR repeat [structural motif]
    cl40423
    Location:487 → 644
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

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