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KCNH5 potassium voltage-gated channel subfamily H member 5 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 105758458, updated on 13-Aug-2024

Summary

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Gene symbol
KCNH5
Gene description
potassium voltage-gated channel subfamily H member 5
See related
Ensembl:ENSTGUG00000012967
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See KCNH5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 5 NC_044217.2 (55363803..55524112)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 5 NC_045004.1 (55501991..55655094)

Chromosome 5 - NC_044217.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115495625 Neighboring gene protein phosphatase 2 regulatory subunit B'epsilon Neighboring gene ras homolog family member J Neighboring gene uncharacterized LOC116808503 Neighboring gene synaptotagmin 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell-type homologies and the origins of the neocortex. Dugas-Ford J, et al. Proc Natl Acad Sci U S A, 2012 Oct 16. PMID 23027930, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium voltage-gated channel subfamily H member 5
Names
potassium voltage-gated channel subfamily H member 5 pseudogene
potassium voltage-gated channel, subfamily H (eag-related), member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044217.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    55363803..55524112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030275155.3 → XP_030131015.1  potassium voltage-gated channel subfamily H member 5

    UniProtKB/TrEMBL
    A0A674HSL3, H0ZRW2
    Related
    ENSTGUP00000037311.1
    Conserved Domains (3) summary
    cd00038
    Location:551 → 661
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:217 → 479
    Ion_trans; Ion transport protein
    pfam13426
    Location:39 → 132
    PAS_9; PAS domain
Nucleotide Protein
Heading Accession and Version

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