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PKD1L3 polycystin 1 like 3, transient receptor potential channel interacting [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 105757958, updated on 13-Mar-2024

Summary

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Gene symbol
PKD1L3
Gene description
polycystin 1 like 3, transient receptor potential channel interacting
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See PKD1L3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450279.1 (1439039..1509146, complement)

NW_004450279.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 821 Neighboring gene IST1 homolog Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene haptoglobin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450279.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450279.1 Reference Oros_1.0 Primary Assembly

    Range
    1439039..1509146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012565704.1 → XP_012421158.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 3

    Conserved Domains (4) summary
    cd00037
    Location:33 → 137
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    pfam08016
    Location:1296 → 1705
    PKD_channel; Polycystin cation channel
    cl00011
    Location:717 → 833
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    cl02559
    Location:608 → 647
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
Heading Accession and Version

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