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LINC02676 long intergenic non-protein coding RNA 2676 [ Homo sapiens (human) ]

Gene ID: 105755953, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02676provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2676provided by HGNC
Primary source
HGNC:HGNC:54170
See related
Ensembl:ENSG00000234752 AllianceGenome:HGNC:54170
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02676 in Genome Data Viewer
Location:
10p14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (8897989..8914596)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (8900073..8916684)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (8939952..8956559)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:8697559-8698758 Neighboring gene uncharacterized LOC105376400 Neighboring gene RNA, 5S ribosomal pseudogene 299 Neighboring gene uncharacterized LOC101928272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:9315328-9315828 Neighboring gene long intergenic non-protein coding RNA 709 Neighboring gene NANOG hESC enhancer GRCh37_chr10:9384821-9385337 Neighboring gene long intergenic non-protein coding RNA 2663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2990 Neighboring gene heat shock protein 90 alpha family class B member 7, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131944.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC044784, AI393622
    Related
    ENST00000447297.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    8897989..8914596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    8900073..8916684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials