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CD44 CD44 molecule (IN blood group) [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 105750947, updated on 13-Mar-2024

Summary

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Gene symbol
CD44
Gene description
CD44 molecule (IN blood group)
See related
Ensembl:ENSSHAG00000027755
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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See CD44 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 6 NC_045431.1 (221081474..221169372)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 6 Unlocalized Scaffold NW_003846900.1 (625..31368)

Chromosome 6 - NC_045431.1Genomic Context describing neighboring genes Neighboring gene pyruvate dehydrogenase complex component X Neighboring gene MORN repeat-containing protein 2 pseudogene Neighboring gene uncharacterized LOC116419991 Neighboring gene solute carrier family 1 member 2 Neighboring gene peptidase domain containing associated with muscle regeneration 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of macrophage migration inhibitory factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD44 antigen
Names
CD44 molecule (Indian blood group)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045431.1 Reference mSarHar1.11 Primary Assembly

    Range
    221081474..221169372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031942277.1 → XP_031798137.1  CD44 antigen isoform X3

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  2. XM_031942275.1 → XP_031798135.1  CD44 antigen isoform X1

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  3. XM_031942276.1 → XP_031798136.1  CD44 antigen isoform X2

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  4. XM_031942278.1 → XP_031798138.1  CD44 antigen isoform X4

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  5. XM_031942279.1 → XP_031798139.1  CD44 antigen isoform X5

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  6. XM_031942280.1 → XP_031798140.1  CD44 antigen isoform X6

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  7. XM_031942285.1 → XP_031798145.1  CD44 antigen isoform X11

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  8. XM_031942281.1 → XP_031798141.1  CD44 antigen isoform X7

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  9. XM_031942282.1 → XP_031798142.1  CD44 antigen isoform X8

    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  10. XM_031942283.1 → XP_031798143.1  CD44 antigen isoform X9

    UniProtKB/TrEMBL
    A0A7N4P6H0
    Related
    ENSSHAP00000033777.1, ENSSHAT00000025245.1
    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  11. XM_031942284.1 → XP_031798144.1  CD44 antigen isoform X10

    UniProtKB/TrEMBL
    A0A7N4P6H0
    Conserved Domains (1) summary
    cd03516
    Location:26 → 171
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
Nucleotide Protein
Heading Accession and Version

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