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ERI3 ERI1 exoribonuclease family member 3 [ Aotus nancymaae (Ma's night monkey) ]

Gene ID: 105705066, updated on 6-Jun-2024

Summary

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Gene symbol
ERI3
Gene description
ERI1 exoribonuclease family member 3
See related
Ensembl:ENSANAG00000024843
Gene type
protein coding
RefSeq status
MODEL
Organism
Aotus nancymaae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Aotidae; Aotus
Orthologs
human mouse all
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Genomic context

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See ERI3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_04 current 86718_ANA_hifiasm-v0.15.2.pri (GCF_030222135.1) Unplaced Scaffold NW_026988418.1 (7731151..7865540, complement)
101 previous assembly Anan_2.0 (GCF_000952055.2) Unplaced Scaffold NW_018501822.1 (8782216..8916637)

NW_026988418.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B3-like Neighboring gene DNA methyltransferase 1 associated protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene ring finger protein 220 Neighboring gene small ribosomal subunit protein eS27-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ERI1 exoribonuclease 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030222135.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

Genomic

  1. NW_026988418.1 Reference 86718_ANA_hifiasm-v0.15.2.pri Primary Assembly

    Range
    7731151..7865540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021673339.2 → XP_021529014.1  ERI1 exoribonuclease 3 isoform X2

    Conserved Domains (1) summary
    cd06133
    Location:68 → 245
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  2. XM_012434661.2 → XP_012290084.1  ERI1 exoribonuclease 3 isoform X5

    See identical proteins and their annotated locations for XP_012290084.1

    UniProtKB/TrEMBL
    A0A2K5CYV5
    Conserved Domains (1) summary
    cd06133
    Location:1 → 146
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  3. XM_012434658.2 → XP_012290081.1  ERI1 exoribonuclease 3 isoform X4

    See identical proteins and their annotated locations for XP_012290081.1

    Conserved Domains (1) summary
    cd06133
    Location:68 → 203
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  4. XM_012434657.2 → XP_012290080.1  ERI1 exoribonuclease 3 isoform X2

    See identical proteins and their annotated locations for XP_012290080.1

    Conserved Domains (1) summary
    cd06133
    Location:68 → 245
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  5. XM_012434655.2 → XP_012290078.1  ERI1 exoribonuclease 3 isoform X1

    See identical proteins and their annotated locations for XP_012290078.1

    UniProtKB/TrEMBL
    A0A2K5CYY1
    Related
    ENSANAP00000013881.1
    Conserved Domains (1) summary
    cd06133
    Location:146 → 323
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  6. XM_064372283.1 → XP_064228353.1  ERI1 exoribonuclease 3 isoform X5

    UniProtKB/TrEMBL
    A0A2K5CYV5

  7. XM_012434662.2 → XP_012290085.1  ERI1 exoribonuclease 3 isoform X5

    See identical proteins and their annotated locations for XP_012290085.1

    UniProtKB/TrEMBL
    A0A2K5CYV5
    Conserved Domains (1) summary
    cd06133
    Location:1 → 146
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  8. XM_012434660.2 → XP_012290083.1  ERI1 exoribonuclease 3 isoform X5

    See identical proteins and their annotated locations for XP_012290083.1

    UniProtKB/TrEMBL
    A0A2K5CYV5
    Related
    ENSANAP00000013882.1
    Conserved Domains (1) summary
    cd06133
    Location:1 → 146
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  9. XM_064372282.1 → XP_064228352.1  ERI1 exoribonuclease 3 isoform X3

Nucleotide Protein
Heading Accession and Version

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