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Hcf Host cell factor [ Athalia rosae (coleseed sawfly) ]

Gene ID: 105691618, updated on 10-Oct-2024

Summary

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Gene symbol
Hcf
Gene description
Host cell factor
See related
EnsemblRapid:ENSAEAG00005005964
Gene type
protein coding
RefSeq status
MODEL
Organism
Athalia rosae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Athaliidae; Athalia
Orthologs
fruit fly honey bee all
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Genomic context

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See Hcf in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
103 current iyAthRosa1.1 (GCF_917208135.1) 5 NC_064030.1 (14837541..14846475)
102 previous assembly Aros_2.0 (GCF_000344095.2) Unplaced Scaffold NW_020311968.1 (1746827..1754175)

Chromosome 5 - NC_064030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125501080 Neighboring gene uncharacterized LOC125501079 Neighboring gene coatomer subunit alpha Neighboring gene Cysteine rich with EGF like domains Neighboring gene dnaJ homolog subfamily C member 2 Neighboring gene Ca[2+]-channel protein alpha[[1]] subunit D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor
Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Athalia rosae Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyAthRosa1.1

Genomic

  1. NC_064030.1 Reference iyAthRosa1.1

    Range
    14837541..14846475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048656347.1 → XP_048512304.1  host cell factor isoform X1

    Related
    ENSAEAP00005006124.1, ENSAEAT00005011510.1

  2. XM_048656348.1 → XP_048512305.1  host cell factor isoform X2

  3. XM_012410235.4 → XP_012265658.2  host cell factor isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases