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Scgdelta sarcoglycan delta [ Athalia rosae (coleseed sawfly) ]

Gene ID: 105689167, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSAEAG00005006071
Gene type
protein coding
RefSeq status
MODEL
Organism
Athalia rosae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Athaliidae; Athalia
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
103 current iyAthRosa1.1 (GCF_917208135.1) 5 NC_064030.1 (4167968..4301301)
102 previous assembly Aros_2.0 (GCF_000344095.2) Unplaced Scaffold NW_020311979.1 (572650..622566)

Chromosome 5 - NC_064030.1Genomic Context describing neighboring genes Neighboring gene proton channel OtopLc-like Neighboring gene uncharacterized LOC105689157 Neighboring gene uncharacterized LOC105689168 Neighboring gene uncharacterized LOC125500917

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Athalia rosae Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyAthRosa1.1

Genomic

  1. NC_064030.1 Reference iyAthRosa1.1

    Range
    4167968..4301301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048655058.1 → XP_048511015.1  delta-sarcoglycan isoform X1

  2. XM_012405994.3 → XP_012261417.2  delta-sarcoglycan isoform X2

    Related
    ENSAEAP00005006308.1, ENSAEAT00005011694.1

  3. XM_048655059.1 → XP_048511016.1  delta-sarcoglycan isoform X3

  4. XM_048655060.1 → XP_048511017.1  delta-sarcoglycan isoform X4

    Related
    ENSAEAP00005006310.1, ENSAEAT00005011693.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases