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Scgdelta sarcoglycan delta [ Linepithema humile (Argentine ant) ]

Gene ID: 105674460, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:LOC105674460
Gene type
protein coding
RefSeq status
MODEL
Organism
Linepithema humile
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dolichoderinae; Linepithema
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current Lhum_UNIL_v1.0 (GCF_040581485.1) 1 NC_090128.1 (37826916..38006473, complement)
100 previous assembly Lhum_UMD_V04 (GCF_000217595.1) Unplaced Scaffold NW_012158181.1 (13847..197463, complement)

Chromosome 1 - NC_090128.1Genomic Context describing neighboring genes Neighboring gene protein Cep78 homolog Neighboring gene uncharacterized LOC137000275 Neighboring gene titin homolog Neighboring gene uncharacterized LOC105674041

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040581485.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lhum_UNIL_v1.0 Primary Assembly

Genomic

  1. NC_090128.1 Reference Lhum_UNIL_v1.0 Primary Assembly

    Range
    37826916..38006473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012370815.2 → XP_012226238.1  zeta-sarcoglycan isoform X1

    Related
    XP_012226238.1
    Conserved Domains (2) summary
    pfam04790
    Location:138 → 406
    Sarcoglycan_1; Sarcoglycan complex subunit protein
    cl01807
    Location:85 → 184
    DUF1517; Protein of unknown function (DUF1517)

  2. XM_067347984.1 → XP_067204085.1  zeta-sarcoglycan isoform X2

  3. XM_012370980.2 → XP_012226403.1  zeta-sarcoglycan isoform X2

    Related
    XP_012226403.1
    Conserved Domains (2) summary
    pfam04790
    Location:59 → 327
    Sarcoglycan_1; Sarcoglycan complex subunit protein
    cl01807
    Location:6 → 105
    DUF1517; Protein of unknown function (DUF1517)
Nucleotide Protein
Heading Accession and Version

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