U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105648478 pre-mRNA cleavage factor Im 25 kDa subunit 2 [ Jatropha curcas ]

Gene ID: 105648478, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
LOC105648478
Gene description
pre-mRNA cleavage factor Im 25 kDa subunit 2
Locus tag
JCGZ_26122
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC105648478 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591453.1 (1507025..1511271, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012125302.1 (1342669..1346890, complement)

NW_023591453.1Genomic Context describing neighboring genes Neighboring gene transcription factor LAF1 Neighboring gene pentatricopeptide repeat-containing protein At3g29230 Neighboring gene WD repeat-containing protein RUP2 Neighboring gene DNA mismatch repair protein MSH3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pre-mRNA cleavage factor Im 25 kDa subunit 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023591453.1 Reference RJC1_Hi-C Primary Assembly

    Range
    1507025..1511271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012234879.3 → XP_012090269.1  pre-mRNA cleavage factor Im 25 kDa subunit 2

    See identical proteins and their annotated locations for XP_012090269.1

    UniProtKB/TrEMBL
    A0A067JEJ3
    Conserved Domains (1) summary
    pfam13869
    Location:5 → 193
    NUDIX_2; Nucleotide hydrolase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases