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LOC105646209 serine/arginine-rich splicing factor SR45 [ Jatropha curcas ]

Gene ID: 105646209, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105646209
Gene description
serine/arginine-rich splicing factor SR45
Locus tag
JCGZ_22652
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105646209 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591357.1 (24201..29360, complement)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124854.1 (650772..655932, complement)

NW_023591357.1Genomic Context describing neighboring genes Neighboring gene protein Iojap, chloroplastic Neighboring gene uncharacterized LOC105646208 Neighboring gene protein NARROW LEAF 1 Neighboring gene ATPase family AAA domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor SR45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023591357.1 Reference RJC1_Hi-C Primary Assembly

    Range
    24201..29360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012232021.2 → XP_012087411.1  serine/arginine-rich splicing factor SR45 isoform X1

    See identical proteins and their annotated locations for XP_012087411.1

    UniProtKB/TrEMBL
    A0A067JMI8
    Conserved Domains (2) summary
    COG0724
    Location:88 → 192
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12365
    Location:116 → 188
    RRM_RNPS1; RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

  2. XM_020684143.2 → XP_020539802.1  serine/arginine-rich splicing factor SR45 isoform X2

    Conserved Domains (2) summary
    cd12365
    Location:116 → 188
    RRM_RNPS1; RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins
    pfam10446
    Location:252 → 312
    DUF2457; Protein of unknown function (DUF2457)
Nucleotide Protein
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