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LOC105644570 probable xyloglucan endotransglucosylase/hydrolase protein 33 [ Jatropha curcas ]

Gene ID: 105644570, updated on 14-Dec-2023

Summary

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Gene symbol
LOC105644570
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 33
Locus tag
JCGZ_17724
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

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See LOC105644570 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590671.1 (572677..574541)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124748.1 (1588230..1590080, complement)

NW_023590671.1Genomic Context describing neighboring genes Neighboring gene auxin-induced in root cultures protein 12 Neighboring gene probable LRR receptor-like protein kinase At1g51890 Neighboring gene U-box domain-containing protein 19 Neighboring gene uncharacterized LOC105644961 Neighboring gene aldehyde dehydrogenase family 2 member B7, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590671.1 Reference RJC1_Hi-C Primary Assembly

    Range
    572677..574541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012229959.3 → XP_012085349.1  probable xyloglucan endotransglucosylase/hydrolase protein 33

    See identical proteins and their annotated locations for XP_012085349.1

    UniProtKB/TrEMBL
    A0A067JRI4
    Conserved Domains (2) summary
    PLN03161
    Location:37 → 310
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cl22861
    Location:44 → 310
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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