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LOC105644424 probable pectate lyase 8 [ Jatropha curcas ]

Gene ID: 105644424, updated on 14-Dec-2023

Summary

Gene symbol
LOC105644424
Gene description
probable pectate lyase 8
Locus tag
JCGZ_17575
Gene type
protein coding
RefSeq status
MODEL
Organism
Jatropha curcas
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Genomic context

See LOC105644424 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590789.1 (10353139..10357749)
101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124748.1 (512604..517464)

NW_023590789.1Genomic Context describing neighboring genes Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2 Neighboring gene protein LATE FLOWERING Neighboring gene E3 ubiquitin-protein ligase RNF181 Neighboring gene putative kinase-like protein TMKL1

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RJC1_Hi-C Primary Assembly

Genomic

  1. NW_023590789.1 Reference RJC1_Hi-C Primary Assembly

    Range
    10353139..10357749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012229770.3XP_012085160.1  probable pectate lyase 8

    See identical proteins and their annotated locations for XP_012085160.1

    UniProtKB/TrEMBL
    A0A067JRA4
    Conserved Domains (2) summary
    smart00656
    Location:168363
    Amb_all; Amb_all domain
    pfam13229
    Location:188289
    Beta_helix; Right handed beta helix region